EnhancerDB
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  3. rs541949916[chr12:122604173]
Enhancers that have rs541949916[chr12:122604173]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 122578829 122604895 enh2657
Bone Marrow (K562) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs541949916[chr12:122604173]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 122604162 122604175 NR2F1 JASPAR yes 124268699
chr12 122604164 122604175 ESRRA JASPAR yes 124268700
chr12 122604164 122604175 ESRRB JASPAR yes 124268701
chr12 122604165 122604173 NR4A2 JASPAR yes 124268702
chr12 122604166 122604176 RORA JASPAR yes 124268703
chr12 122604166 122604183 RARA JASPAR yes 124268704
chr12 122604166 122604183 RXRA JASPAR yes 124268705
Genes associated with rs541949916[chr12:122604173], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More