EnhancerDB
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  3. rs541961591[chr1:43400988]
Enhancers that have rs541961591[chr1:43400988]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 43394865 43408895 enh296
Bone Marrow (K562) Astrocyte Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Muscle (A673) Heart
chr1 43400932 43401203 vista1382
VISTA
Transcript factors that have rs541961591[chr1:43400988]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 43400793 43401453 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107803001
chr1 43400979 43400990 EBF1 JASPAR yes 28467968
chr1 43400979 43400990 EBF1 JASPAR yes 118281501
chr1 43400984 43400994 SREBF1 JASPAR yes 28467969
chr1 43400984 43400994 SREBF2 JASPAR yes 28467970
chr1 43400984 43400994 SREBF1 JASPAR yes 118281502
chr1 43400984 43400994 SREBF2 JASPAR yes 118281503
chr1 43400987 43400997 SP1 JASPAR yes 28467971
chr1 43400987 43400997 SP1 JASPAR yes 118281504
chr1 43400987 43401004 RXRA JASPAR yes 28467972
chr1 43400987 43401004 RXRA JASPAR yes 118281505
Genes associated with rs541961591[chr1:43400988], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More