EnhancerDB
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  3. rs542030[chr1:234850084]
Enhancers that have rs542030[chr1:234850084]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 234827105 234875936 enh12795
Bone Marrow (K562) Liver Astrocyte Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs542030[chr1:234850084]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 234846140 234850353 ZNF274 GTRD no Bone Marrow (K562) 21396143
chr1 234848192 234850267 ZNF274 GTRD no Blood (GM12878) 21396152
chr1 234848631 234850208 ZNF274 GTRD no Bone Marrow (K562) 21396155
chr1 234848654 234850176 ZNF274 GTRD no Bone Marrow (K562) 21396156
chr1 234848669 234850115 ZNF274 GTRD no Bone Marrow (K562) 21396157
chr1 234848746 234850269 ZNF274 GTRD no Bone Marrow (K562) 21396161
chr1 234848845 234850236 ZNF274 GTRD no Blood (GM12878) 21396168
chr1 234848871 234850315 ZNF274 GTRD no Blood (GM12878) 21396171
chr1 234849027 234850354 ZNF274 GTRD no Blood (GM12878) 21396187
chr1 234849432 234850283 ZNF274 GTRD no Cervix (HeLa-S3) 21396197
chr1 234849724 234850194 ZNF274 GTRD no Blood (GM12878) 21396198
chr1 234849826 234850287 ZNF274 GTRD no Blood (GM12878) 21396199
chr1 234849908 234850265 ZNF274 GTRD no Blood (GM12878) 21396200
chr1 234850078 234850092 MTF1 JASPAR yes 36306227
Genes associated with rs542030[chr1:234850084], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More