EnhancerDB
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  3. rs542040329[chr7:130574050]
Enhancers that have rs542040329[chr7:130574050]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr7 130555356 130592615 enh10036
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs542040329[chr7:130574050]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr7 130574044 130574065 IRF1 JASPAR yes 18032832
chr7 130574046 130574061 STAT2 JASPAR yes 18032833
chr7 130574046 130574067 IRF1 JASPAR yes 18032834
chr7 130574047 130574068 IRF1 JASPAR yes 18032835
chr7 130574048 130574069 IRF1 JASPAR yes 18032836
chr7 130574049 130574064 FOXP1 JASPAR yes 18032837
chr7 130574049 130574070 IRF1 JASPAR yes 18032838
chr7 130574050 130574065 FOXP1 JASPAR yes 18032839
chr7 130574050 130574071 IRF1 JASPAR yes 18032840
Genes associated with rs542040329[chr7:130574050], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More