EnhancerDB
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  3. rs542158550[chr1:41879235]
Enhancers that have rs542158550[chr1:41879235]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 41849805 41888800 enh11788
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs542158550[chr1:41879235]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 41879228 41879247 CTCF JASPAR yes 28387185
chr1 41879229 41879244 ZIC3 JASPAR yes 28387186
chr1 41879229 41879244 ZIC4 JASPAR yes 28387187
chr1 41879230 41879244 ZIC1 JASPAR yes 28387188
Genes associated with rs542158550[chr1:41879235], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More