EnhancerDB
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  3. rs542159375[chr12:109242921]
Enhancers that have rs542159375[chr12:109242921]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 109230004 109245900 enh14979
Bone Marrow (K562) Brain (SK-N-MC) Adrenal Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs542159375[chr12:109242921]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 109242911 109242924 NFKB1 JASPAR yes 123626888
chr12 109242911 109242924 NFKB2 JASPAR yes 123626889
chr12 109242912 109242923 NFKB1 JASPAR yes 123626890
chr12 109242913 109242923 NFKB1 JASPAR yes 123626891
chr12 109242913 109242923 RELA JASPAR yes 123626892
chr12 109242913 109242923 REL JASPAR yes 123626893
chr12 109242913 109242924 NFKB1 JASPAR yes 123626894
chr12 109242914 109242924 REL JASPAR yes 123626895
chr12 109242917 109242931 GLIS2 JASPAR yes 123626896
chr12 109242917 109242931 GLIS3 JASPAR yes 123626897
chr12 109242921 109242927 SP1 TRANSFAC yes 123626898
Genes associated with rs542159375[chr12:109242921], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More