EnhancerDB
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  3. rs542175421[chr17:65474665]
Enhancers that have rs542175421[chr17:65474665]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 65460484 65480775 enh32309
Astrocyte Colon (HCT116) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Kidney Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Spleen Muscle (Myotube) Lung Muscle (A673) Heart
Transcript factors that have rs542175421[chr17:65474665]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 65474645 65474666 IRF1 JASPAR yes 55509359
chr17 65474645 65474666 ZNF263 JASPAR yes 55509360
chr17 65474648 65474669 ZNF263 JASPAR yes 55509361
chr17 65474657 65474678 ZNF263 JASPAR yes 55509363
chr17 65474660 65474681 ZNF263 JASPAR yes 55509364
chr17 65474665 65474672 NFATC2 JASPAR yes 55509365
Genes associated with rs542175421[chr17:65474665], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More