EnhancerDB
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  3. rs542180781[chr1:19782365]
Enhancers that have rs542180781[chr1:19782365]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19747725 19800935 enh99
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs542180781[chr1:19782365]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19782352 19782367 FOXP1 JASPAR yes 27192774
chr1 19782356 19782371 HNF4G JASPAR yes 27192775
chr1 19782357 19782372 HNF4A JASPAR yes 27192776
Genes associated with rs542180781[chr1:19782365], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More