EnhancerDB
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  3. rs542192861[chr12:125255517]
Enhancers that have rs542192861[chr12:125255517]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs542192861[chr12:125255517]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125255124 125255674 TCF7L2 GTRD no Colon (HCT116) 21582993
chr12 125255436 125255812 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21582994
chr12 125255515 125255526 HOXA10 JASPAR yes 124420303
chr12 125255516 125255525 CDX1 JASPAR yes 124420304
chr12 125255516 125255526 HOXA13 JASPAR yes 124420305
chr12 125255516 125255526 HOXB13 JASPAR yes 124420306
chr12 125255516 125255526 HOXD13 JASPAR yes 124420307
chr12 125255517 125255529 FOXI1 JASPAR yes 124420308
Genes associated with rs542192861[chr12:125255517], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More