EnhancerDB
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  3. rs542199066[chr1:19742621]
Enhancers that have rs542199066[chr1:19742621]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19711685 19745775 enh98
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Neural Stem Cells (H9) Thymus Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs542199066[chr1:19742621]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19742619 19742634 STAT1 JASPAR yes 27187608
chr1 19742621 19742632 STAT1 JASPAR yes 27187609
chr1 19742621 19742632 STAT3 JASPAR yes 27187610
Genes associated with rs542199066[chr1:19742621], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More