EnhancerDB
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  3. rs542228665[chr1:171393026]
Enhancers that have rs542228665[chr1:171393026]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 171385965 171412775 enh12367
Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Prostate (RWPE1)
Transcript factors that have rs542228665[chr1:171393026]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 171392505 171393062 TCF7L2 GTRD no Colon (HCT116) 21349623
chr1 171392925 171393590 ZNF143 GTRD no Epithelial (MCF-7) 21349626
chr1 171392976 171394439 ZNF143 GTRD no Epithelial (MCF-7) 21349627
chr1 171392990 171394373 ZNF143 GTRD no Epithelial (MCF-7) 21349628
chr1 171393021 171393038 ZNF410 JASPAR yes 33078917
Genes associated with rs542228665[chr1:171393026], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More