EnhancerDB
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  3. rs542229597[chr1:39600989]
Enhancers that have rs542229597[chr1:39600989]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39588469 39628695 enh11759
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs542229597[chr1:39600989]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39600981 39600991 ERG JASPAR yes 28256338
chr1 39600981 39600991 ETS1 JASPAR yes 28256339
chr1 39600981 39600992 ETV2 JASPAR yes 28256340
chr1 39600983 39600989 ETS1 JASPAR yes 28256341
Genes associated with rs542229597[chr1:39600989], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More