EnhancerDB
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  3. rs542238828[chr5:77800608]
Enhancers that have rs542238828[chr5:77800608]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 77784972 77817655 enh8511
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Heart
chr5 77800435 77801147 vista48136
VISTA
Transcript factors that have rs542238828[chr5:77800608]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 77800607 77800619 ZBTB7A JASPAR yes 63593733
chr5 77800607 77800619 ZBTB7A JASPAR yes 70668032
chr5 77800607 77800627 RREB1 JASPAR yes 63593734
chr5 77800607 77800627 RREB1 JASPAR yes 70668033
chr5 77800608 77800620 GLI2 JASPAR yes 63593735
chr5 77800608 77800620 GLI2 JASPAR yes 70668034
chr5 77800608 77800623 RUNX2 JASPAR yes 63593736
chr5 77800608 77800623 RUNX2 JASPAR yes 70668035
Genes associated with rs542238828[chr5:77800608], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More