EnhancerDB
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  3. rs542272534[chr2:238571512]
Enhancers that have rs542272534[chr2:238571512]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 238567229 238591955 enh19400
Brain (SK-N-MC) Liver Astrocyte Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Neural Stem Cells (H9) Thymus Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs542272534[chr2:238571512]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 238571506 238571525 RFX2 JASPAR yes 82128907
chr2 238571510 238571526 RFX2 JASPAR yes 82128908
chr2 238571510 238571526 RFX3 JASPAR yes 82128909
chr2 238571510 238571526 RFX4 JASPAR yes 82128910
chr2 238571510 238571526 RFX5 JASPAR yes 82128911
chr2 238571511 238571530 RFX2 JASPAR yes 82128912
Genes associated with rs542272534[chr2:238571512], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More