EnhancerDB
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  3. rs542397509[chr6:29935492]
Enhancers that have rs542397509[chr6:29935492]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 29930235 29938316 enh9028
Liver Astrocyte Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
chr6 29935319 29935652 vista51502
VISTA
Transcript factors that have rs542397509[chr6:29935492]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 29935295 29936003 GATA1 UCSC Txn Factor no Conserved 108539463
chr6 29935347 29935637 NR2F2 UCSC Txn Factor no Conserved 108539464
chr6 29935363 29935597 TEAD4 UCSC Txn Factor no Conserved 108539465
chr6 29935375 29935604 TAL1 UCSC Txn Factor no Conserved 108539466
chr6 29935480 29935499 REST JASPAR yes 70342166
chr6 29935480 29935499 REST JASPAR yes 101019016
chr6 29935484 29935495 FOXA1 JASPAR yes 70342167
chr6 29935484 29935495 FOXA1 JASPAR yes 101019017
chr6 29935490 29935502 NHLH1 JASPAR yes 70342168
chr6 29935490 29935502 NHLH1 JASPAR yes 101019018
chr6 29935491 29935501 FIGLA JASPAR yes 70342169
chr6 29935491 29935501 MSC JASPAR yes 70342170
chr6 29935491 29935501 MYF6 JASPAR yes 70342171
chr6 29935491 29935501 TFAP4 JASPAR yes 70342172
chr6 29935491 29935501 FIGLA JASPAR yes 101019019
chr6 29935491 29935501 MSC JASPAR yes 101019020
chr6 29935491 29935501 MYF6 JASPAR yes 101019021
chr6 29935491 29935501 TFAP4 JASPAR yes 101019022
Genes associated with rs542397509[chr6:29935492], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More