EnhancerDB
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  3. rs542521060[chr12:125199166]
Enhancers that have rs542521060[chr12:125199166]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs542521060[chr12:125199166]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125198057 125199373 TCF7L2 GTRD no Colon (HCT116) 21582177
chr12 125198057 125199373 TCF7L2 GTRD no Colon (HCT116) 108069555
chr12 125198057 125199373 TCF7L2 GTRD no Colon (HCT116) 108069556
chr12 125198389 125199204 ZNF274 GTRD no Cervix (HeLa-S3) 21582205
chr12 125198389 125199204 ZNF274 GTRD no Cervix (HeLa-S3) 108069591
chr12 125198706 125199213 ZBTB33 GTRD no Lung (A549) 21582217
chr12 125199165 125199186 ZNF263 JASPAR yes 124412459
Genes associated with rs542521060[chr12:125199166], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More