EnhancerDB
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  3. rs542569739[chr12:46827886]
Enhancers that have rs542569739[chr12:46827886]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 46820955 46858735 enh14676
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs542569739[chr12:46827886]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 46827565 46828069 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21541604
chr12 46827678 46827998 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21541605
chr12 46827680 46828020 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21541606
chr12 46827727 46827977 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21541607
chr12 46827879 46827893 TCF7L2 JASPAR yes 120619756
chr12 46827879 46827894 LEF1 JASPAR yes 120619757
chr12 46827883 46827889 TCF1 TRANSFAC yes 120619758
Genes associated with rs542569739[chr12:46827886], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More