EnhancerDB
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  3. rs542578646[chr6:16347401]
Enhancers that have rs542578646[chr6:16347401]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 16329544 16348350 enh8975
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs542578646[chr6:16347401]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 16347396 16347406 SP1 JASPAR yes 100290670
chr6 16347398 16347403 SP1 TRANSFAC yes 100290671
chr6 16347398 16347404 SP1 TRANSFAC yes 100290672
chr6 16347398 16347405 SP1 TRANSFAC yes 100290673
Genes associated with rs542578646[chr6:16347401], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More