EnhancerDB
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  3. rs542880219[chr1:10130500]
Enhancers that have rs542880219[chr1:10130500]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 10113864 10131352 enh11492
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Ovary Bone (Osteoblast) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs542880219[chr1:10130500]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 10130490 10130505 MEF2A JASPAR yes 26699858
chr1 10130491 10130503 MEF2A JASPAR yes 26699859
chr1 10130494 10130515 IRF1 JASPAR yes 26699860
chr1 10130495 10130516 IRF1 JASPAR yes 26699861
chr1 10130496 10130517 IRF1 JASPAR yes 26699862
chr1 10130497 10130512 FOXP1 JASPAR yes 26699863
chr1 10130498 10130513 FOXP1 JASPAR yes 26699864
chr1 10130499 10130505 TBP TRANSFAC yes 26699865
chr1 10130499 10130514 FOXP1 JASPAR yes 26699866
chr1 10130500 10130515 FOXP1 JASPAR yes 26699867
chr1 10130500 10130521 IRF1 JASPAR yes 26699868
Genes associated with rs542880219[chr1:10130500], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More