EnhancerDB
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  3. rs542983597[chr17:80450230]
Enhancers that have rs542983597[chr17:80450230]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 80448407 80467804 enh4648
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Prostate (RWPE1) Lung Muscle (A673)
Transcript factors that have rs542983597[chr17:80450230]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 80448031 80451023 TCF7L2 GTRD no Colon (HCT116) 21800291
chr17 80448905 80452854 TCF7L2 GTRD no Colon (HCT116) 21800299
chr17 80449531 80451615 ZNF274 GTRD no Cervix (HeLa-S3) 21800304
chr17 80450051 80450806 TCF7L2 GTRD no Colon (HCT116) 21800306
chr17 80450158 80450428 TCF7L2 GTRD no Colon (HCT116) 21800307
chr17 80450211 80451828 TCF7L2 GTRD no Colon (HCT116) 21800308
chr17 80450224 80450245 IRF1 JASPAR yes 56367085
chr17 80450226 80450241 STAT2 JASPAR yes 56367086
chr17 80450227 80450248 IRF1 JASPAR yes 56367087
chr17 80450228 80450249 IRF1 JASPAR yes 56367088
chr17 80450229 80450244 FOXP1 JASPAR yes 56367089
chr17 80450230 80450245 FOXP1 JASPAR yes 56367090
Genes associated with rs542983597[chr17:80450230], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More