EnhancerDB
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  3. rs543290178[chr17:25672137]
Enhancers that have rs543290178[chr17:25672137]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 25656275 25685575 enh4305
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs543290178[chr17:25672137]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 25672002 25672522 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108245186
chr17 25672026 25672968 POLR2A UCSC Txn Factor no Conserved 108245187
chr17 25672045 25672749 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108245188
chr17 25672080 25672390 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108245189
chr17 25672082 25672752 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108245190
chr17 25672095 25672419 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108245191
chr17 25672100 25672430 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108245192
chr17 25672105 25672683 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108245193
chr17 25672105 25672784 TAF1 UCSC Txn Factor no Conserved 108245194
chr17 25672112 25672728 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108245195
chr17 25672126 25672514 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108245196
chr17 25672134 25672147 ELF1 JASPAR yes 53622254
chr17 25672137 25672144 SPIB JASPAR yes 53622255
chr17 25672137 25672147 GABPA JASPAR yes 53622256
Genes associated with rs543290178[chr17:25672137], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More