EnhancerDB
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  3. rs543325752[chr1:39600129]
Enhancers that have rs543325752[chr1:39600129]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39588469 39628695 enh11759
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs543325752[chr1:39600129]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39600116 39600131 TFAP2C JASPAR yes 28256120
chr1 39600119 39600130 EBF1 JASPAR yes 28256121
chr1 39600125 39600146 IRF1 JASPAR yes 28256122
chr1 39600129 39600141 IRF1 JASPAR yes 28256123
chr1 39600129 39600143 IRF7 JASPAR yes 28256124
chr1 39600129 39600144 IRF9 JASPAR yes 28256125
Genes associated with rs543325752[chr1:39600129], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More