EnhancerDB
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  3. rs543506509[chr1:171402617]
Enhancers that have rs543506509[chr1:171402617]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 171385965 171412775 enh12367
Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Prostate (RWPE1)
Transcript factors that have rs543506509[chr1:171402617]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 171402597 171402617 RREB1 JASPAR yes 33080284
chr1 171402600 171402620 RREB1 JASPAR yes 33080285
chr1 171402603 171402623 RREB1 JASPAR yes 33080286
chr1 171402606 171402626 RREB1 JASPAR yes 33080287
chr1 171402608 171402628 RREB1 JASPAR yes 33080288
chr1 171402609 171402624 FOXP1 JASPAR yes 33080289
chr1 171402611 171402631 RREB1 JASPAR yes 33080290
chr1 171402613 171402628 FOXP1 JASPAR yes 33080291
chr1 171402614 171402625 FOXA1 JASPAR yes 33080292
chr1 171402614 171402629 FOXA1 JASPAR yes 33080293
chr1 171402615 171402627 FOXC2 JASPAR yes 33080294
chr1 171402615 171402635 RREB1 JASPAR yes 33080295
chr1 171402616 171402628 FOXI1 JASPAR yes 33080296
chr1 171402616 171402636 RREB1 JASPAR yes 33080297
Genes associated with rs543506509[chr1:171402617], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More