EnhancerDB
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  3. rs543558860[chr13:113394472]
Enhancers that have rs543558860[chr13:113394472]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr13 113356925 113401095 enh15512
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs543558860[chr13:113394472]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr13 113392878 113394948 ZNF274 GTRD no Cervix (HeLa-S3) 21605781
chr13 113392878 113394948 ZNF274 GTRD no Cervix (HeLa-S3) 108090521
chr13 113392949 113394571 TCF7L2 GTRD no Colon (HCT116) 21605782
chr13 113392949 113394571 TCF7L2 GTRD no Colon (HCT116) 108090522
chr13 113393046 113394829 ZNF143 GTRD no Epithelial (MCF-7) 21605783
chr13 113393046 113394829 ZNF143 GTRD no Epithelial (MCF-7) 108090523
chr13 113393151 113394737 ZNF274 GTRD no Blood (GM12878) 108090524
chr13 113393172 113394625 TCF7L2 GTRD no Colon (HCT116) 21605784
chr13 113393172 113394625 TCF7L2 GTRD no Colon (HCT116) 108090526
chr13 113393177 113394475 ZNF143 GTRD no Epithelial (MCF-7) 21605788
chr13 113393177 113394475 ZNF143 GTRD no Epithelial (MCF-7) 108090530
chr13 113393206 113394500 ZNF143 GTRD no Epithelial (MCF-7) 21605790
chr13 113393206 113394500 ZNF143 GTRD no Epithelial (MCF-7) 108090532
chr13 113393236 113394568 ZNF274 GTRD no Blood (GM12878) 108090535
chr13 113393261 113394582 TCF7L2 GTRD no Colon (HCT116) 21605793
chr13 113393261 113394582 TCF7L2 GTRD no Colon (HCT116) 108090536
chr13 113394460 113394472 MEF2A JASPAR yes 60432823
chr13 113394460 113394472 MEF2B JASPAR yes 60432824
chr13 113394460 113394472 MEF2D JASPAR yes 60432825
chr13 113394462 113394473 FOXB1 JASPAR yes 60432828
chr13 113394463 113394474 FOXB1 JASPAR yes 60432829
chr13 113394464 113394472 FOXL1 JASPAR yes 60432830
chr13 113394464 113394475 FOXB1 JASPAR yes 60432831
chr13 113394465 113394476 FOXB1 JASPAR yes 60432832
chr13 113394466 113394474 FOXL1 JASPAR yes 60432833
chr13 113394466 113394477 FOXB1 JASPAR yes 60432834
chr13 113394467 113394478 FOXB1 JASPAR yes 60432835
chr13 113394468 113394476 FOXL1 JASPAR yes 60432836
chr13 113394468 113394479 FOXB1 JASPAR yes 60432837
chr13 113394469 113394480 FOXB1 JASPAR yes 60432838
chr13 113394470 113394478 FOXL1 JASPAR yes 60432839
chr13 113394470 113394481 FOXB1 JASPAR yes 60432840
chr13 113394471 113394482 FOXB1 JASPAR yes 60432841
chr13 113394472 113394480 FOXL1 JASPAR yes 60432842
chr13 113394472 113394483 FOXB1 JASPAR yes 60432843
Genes associated with rs543558860[chr13:113394472], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More