EnhancerDB
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  3. rs544020411[chr12:52365222]
Enhancers that have rs544020411[chr12:52365222]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52362566 52373215 enh14724
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Breast Liver (HepG2) Prostate (RWPE1) Muscle (A673)
chr12 52364914 52365223 vista13428
VISTA
Transcript factors that have rs544020411[chr12:52365222]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52364744 52365340 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108032687
chr12 52364787 52365307 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108032688
chr12 52364791 52365307 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108032689
chr12 52364793 52365423 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108032690
chr12 52364824 52365234 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108032693
chr12 52364850 52365234 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108032696
chr12 52364880 52365299 RUNX3 UCSC Txn Factor no Conserved 108032698
chr12 52364880 52365299 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108032699
chr12 52364908 52365231 BATF UCSC Txn Factor no Conserved 108032703
chr12 52364908 52365231 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108032704
chr12 52364908 52365238 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108032705
chr12 52364934 52365239 ATF2 UCSC Txn Factor no Conserved 108032708
chr12 52364934 52365239 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108032709
chr12 52364936 52365249 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108032710
chr12 52364960 52365270 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108032711
chr12 52364963 52365319 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21545903
chr12 52364963 52365319 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108032712
chr12 52364999 52365595 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108032715
chr12 52365013 52365289 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108032716
chr12 52365018 52365693 ZNF274 GTRD no Blood (GM12878) 108032717
chr12 52365083 52365467 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21545904
chr12 52365083 52365467 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108032719
chr12 52365093 52365561 ZNF274 GTRD no Blood (GM12878) 108032720
chr12 52365108 52365448 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21545905
chr12 52365108 52365448 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108032721
chr12 52365116 52365517 ZNF274 GTRD no Blood (GM12878) 108032722
chr12 52365127 52365457 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21545906
chr12 52365127 52365457 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108032723
chr12 52365128 52365538 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108032724
chr12 52365147 52365411 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21545907
chr12 52365147 52365411 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108032725
chr12 52365154 52365462 ZNF274 GTRD no Blood (GM12878) 108032726
chr12 52365203 52365502 ZNF274 GTRD no Blood (GM12878) 108032727
chr12 52365217 52365223 ETS1 JASPAR yes 82404816
chr12 52365217 52365223 ETS1 JASPAR yes 120911153
Genes associated with rs544020411[chr12:52365222], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More