EnhancerDB
  1. Home
  2. SNP
  3. rs544517050[chr1:27988962]
Enhancers that have rs544517050[chr1:27988962]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27968485 27992074 enh178
Bone Marrow (K562) Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Placenta Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs544517050[chr1:27988962]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27988953 27988972 RFX2 JASPAR yes 27720150
chr1 27988957 27988973 RFX2 JASPAR yes 27720151
chr1 27988957 27988973 RFX3 JASPAR yes 27720152
chr1 27988957 27988973 RFX4 JASPAR yes 27720153
chr1 27988957 27988973 RFX5 JASPAR yes 27720154
Genes associated with rs544517050[chr1:27988962], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More