EnhancerDB
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  3. rs546091427[chr19:10988977]
Enhancers that have rs546091427[chr19:10988977]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 10983285 11012541 enh5003
Bone Marrow (K562) Brain (SK-N-MC) Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs546091427[chr19:10988977]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 10988783 10989357 ZNF143 GTRD no Epithelial (MCF-7) 21849139
chr19 10988783 10989357 ZNF143 GTRD no Epithelial (MCF-7) 108384222
chr19 10988814 10989429 ZNF274 GTRD no Bone Marrow (K562) 21849140
chr19 10988814 10989429 ZNF274 GTRD no Bone Marrow (K562) 108384223
chr19 10988908 10989572 TCF7L2 GTRD no Colon (HCT116) 21849141
chr19 10988908 10989572 TCF7L2 GTRD no Colon (HCT116) 108384224
chr19 10988908 10989711 ZNF143 GTRD no Epithelial (MCF-7) 21849142
chr19 10988908 10989711 ZNF143 GTRD no Epithelial (MCF-7) 108384225
chr19 10988919 10989703 ZNF143 GTRD no Epithelial (MCF-7) 21849143
chr19 10988919 10989703 ZNF143 GTRD no Epithelial (MCF-7) 108384226
chr19 10988963 10988978 TFAP2C JASPAR yes 112442022
chr19 10988965 10988977 TFAP2A JASPAR yes 112442023
chr19 10988965 10988977 TFAP2B JASPAR yes 112442024
chr19 10988965 10988977 TFAP2C JASPAR yes 112442025
chr19 10988965 10988980 TFAP2A JASPAR yes 112442026
chr19 10988965 10988980 TFAP2C JASPAR yes 112442027
chr19 10988966 10988977 TFAP2A JASPAR yes 112442028
chr19 10988966 10988977 TFAP2B JASPAR yes 112442029
chr19 10988966 10988977 TFAP2C JASPAR yes 112442030
chr19 10988966 10989417 ZNF143 GTRD no Epithelial (MCF-7) 21849144
chr19 10988966 10989417 ZNF143 GTRD no Epithelial (MCF-7) 108384227
chr19 10988975 10989450 ZNF274 GTRD no Blood (GM12878) 21849145
chr19 10988975 10989450 ZNF274 GTRD no Blood (GM12878) 108384228
Genes associated with rs546091427[chr19:10988977], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More