EnhancerDB
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  3. rs546101220[chr16:88540940]
Enhancers that have rs546101220[chr16:88540940]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 88521345 88553535 enh4185
Bone Marrow (K562) Brain (SK-N-SH) Epithelial (MCF-7) Large Intestine Prostate (RWPE1) Liver Blood (T-cell) Lung Blood (OCI-LY7) Stomach Muscle (A673) Placenta Colon (HCT116) Blood (Karpas-422) Pancreas Thymus Heart
Transcript factors that have rs546101220[chr16:88540940]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 88536250 88541434 TCF7L2 GTRD no Colon (HCT116) 21736506
chr16 88536250 88541434 TCF7L2 GTRD no Colon (HCT116) 108222374
chr16 88536250 88541434 TCF7L2 GTRD no Colon (HCT116) 108222375
chr16 88536250 88541434 TCF7L2 GTRD no Colon (HCT116) 108222376
chr16 88537003 88541599 TCF7L2 GTRD no Colon (HCT116) 21736511
chr16 88537003 88541599 TCF7L2 GTRD no Colon (HCT116) 108222393
chr16 88537003 88541599 TCF7L2 GTRD no Colon (HCT116) 108222394
chr16 88537003 88541620 ZNF143 GTRD no Epithelial (MCF-7) 21736512
chr16 88537003 88541620 ZNF143 GTRD no Epithelial (MCF-7) 108222395
chr16 88537003 88541620 ZNF143 GTRD no Epithelial (MCF-7) 108222396
chr16 88537015 88541479 ZNF143 GTRD no Epithelial (MCF-7) 21736514
chr16 88537015 88541479 ZNF143 GTRD no Epithelial (MCF-7) 108222398
chr16 88537015 88541479 ZNF143 GTRD no Epithelial (MCF-7) 108222399
chr16 88537038 88541533 ZNF143 GTRD no Epithelial (MCF-7) 21736516
chr16 88537038 88541533 ZNF143 GTRD no Epithelial (MCF-7) 108222401
chr16 88537038 88541533 ZNF143 GTRD no Epithelial (MCF-7) 108222402
chr16 88537053 88541508 ZNF143 GTRD no Epithelial (MCF-7) 21736518
chr16 88537053 88541508 ZNF143 GTRD no Epithelial (MCF-7) 108222405
chr16 88537053 88541508 ZNF143 GTRD no Epithelial (MCF-7) 108222406
chr16 88537077 88541461 TCF7L2 GTRD no Colon (HCT116) 21736519
chr16 88537077 88541461 TCF7L2 GTRD no Colon (HCT116) 108222407
chr16 88537077 88541461 TCF7L2 GTRD no Colon (HCT116) 108222408
chr16 88538997 88541407 TCF7L2 GTRD no Colon (HCT116) 21736531
chr16 88538997 88541407 TCF7L2 GTRD no Colon (HCT116) 108222428
chr16 88539184 88541555 ZNF143 GTRD no Epithelial (MCF-7) 21736532
chr16 88539184 88541555 ZNF143 GTRD no Epithelial (MCF-7) 108222429
chr16 88539623 88541589 TCF7L2 GTRD no Colon (HCT116) 21736533
chr16 88539623 88541589 TCF7L2 GTRD no Colon (HCT116) 108222430
chr16 88540371 88541000 ZNF274 GTRD no Bone Marrow (K562) 21736549
chr16 88540371 88541000 ZNF274 GTRD no Bone Marrow (K562) 108222447
chr16 88540424 88541215 TCF7L2 GTRD no Colon (HCT116) 21736551
chr16 88540424 88541215 TCF7L2 GTRD no Colon (HCT116) 108222449
chr16 88540504 88540981 ZNF274 GTRD no Bone Marrow (K562) 21736553
chr16 88540504 88540981 ZNF274 GTRD no Bone Marrow (K562) 108222451
chr16 88540558 88540958 ZNF274 GTRD no Bone Marrow (K562) 21736554
chr16 88540558 88540958 ZNF274 GTRD no Bone Marrow (K562) 108222452
chr16 88540637 88541010 ZNF274 GTRD no Bone Marrow (K562) 21736555
chr16 88540637 88541010 ZNF274 GTRD no Bone Marrow (K562) 108222453
chr16 88540685 88541114 ZNF143 GTRD no Epithelial (MCF-7) 21736556
chr16 88540685 88541114 ZNF143 GTRD no Epithelial (MCF-7) 108222454
chr16 88540754 88541073 ZNF274 GTRD no Bone Marrow (K562) 21736557
chr16 88540754 88541073 ZNF274 GTRD no Bone Marrow (K562) 108222456
chr16 88540920 88540941 ZNF263 JASPAR yes 12288546
chr16 88540927 88540948 ZNF263 JASPAR yes 12288548
Genes associated with rs546101220[chr16:88540940], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More