EnhancerDB
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  3. rs546159688[chr1:43998072]
Enhancers that have rs546159688[chr1:43998072]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 43989845 44027077 enh11814
Astrocyte Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Heart
chr1 43997843 43998152 vista1411
VISTA
Transcript factors that have rs546159688[chr1:43998072]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 43998060 43998075 HNF4G JASPAR yes 28502802
chr1 43998060 43998075 TFAP2A JASPAR yes 28502803
chr1 43998060 43998075 HNF4G JASPAR yes 118283011
chr1 43998060 43998075 TFAP2A JASPAR yes 118283012
chr1 43998061 43998076 HNF4A JASPAR yes 28502805
chr1 43998061 43998076 HNF4A JASPAR yes 118283014
chr1 43998070 43998074 LFA1 TRANSFAC yes 28502806
chr1 43998070 43998074 LFA1 TRANSFAC yes 118283015
Genes associated with rs546159688[chr1:43998072], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More