EnhancerDB
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  3. rs546196909[chr6:109056660]
Enhancers that have rs546196909[chr6:109056660]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 109044985 109078935 enh23481
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Ovary Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Heart
chr6 109056613 109056789 vista53049
VISTA
Transcript factors that have rs546196909[chr6:109056660]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 109056569 109056798 TFAP2C UCSC Txn Factor no Conserved 108541233
chr6 109056642 109056660 ESR1 JASPAR yes 70414221
chr6 109056642 109056660 ESR1 JASPAR yes 104199383
chr6 109056643 109056663 ESR1 JASPAR yes 70414223
chr6 109056643 109056663 ESR1 JASPAR yes 104199385
chr6 109056656 109056669 EOMES JASPAR yes 70414227
chr6 109056656 109056669 EOMES JASPAR yes 104199389
chr6 109056658 109056662 ESR1 TRANSFAC yes 70414228
chr6 109056658 109056662 ESR1 TRANSFAC yes 104199390
chr6 109056659 109056669 SREBF1 JASPAR yes 70414229
chr6 109056659 109056669 SREBF2 JASPAR yes 70414230
chr6 109056659 109056669 SREBF1 JASPAR yes 104199391
chr6 109056659 109056669 SREBF2 JASPAR yes 104199392
chr6 109056660 109056668 MGA JASPAR yes 70414231
chr6 109056660 109056668 MGA JASPAR yes 104199393
Genes associated with rs546196909[chr6:109056660], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More