EnhancerDB
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  3. rs546280258[chr1:117421517]
Enhancers that have rs546280258[chr1:117421517]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 117411045 117431652 enh12190
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Kidney Stomach Skin (Keratinocyte) Epithelial (MCF-7) Brain (SK-N-SH) Thyroid Neural Stem Cells (H9) Thymus Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung
Transcript factors that have rs546280258[chr1:117421517]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 117420986 117421630 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21334036
chr1 117420986 117421630 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107825105
chr1 117421255 117421655 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21334043
chr1 117421255 117421655 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107825106
chr1 117421267 117421937 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107825107
chr1 117421415 117422071 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21334044
chr1 117421415 117422071 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107825108
chr1 117421473 117421973 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21334045
chr1 117421473 117421973 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107825109
chr1 117421478 117421858 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21334046
chr1 117421478 117421858 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107825110
chr1 117421498 117422088 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21334047
chr1 117421498 117422088 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107825111
chr1 117421507 117421518 BATF JASPAR yes 31847998
chr1 117421508 117421519 JUNB JASPAR yes 31847999
chr1 117421509 117421520 FOS JASPAR yes 31848000
chr1 117421509 117421520 FOSL1 JASPAR yes 31848001
chr1 117421510 117421519 JDP2 JASPAR yes 31848002
chr1 117421510 117421521 FOSL2 JASPAR yes 31848003
chr1 117421510 117421523 DUXA JASPAR yes 31848004
chr1 117421511 117421522 BATF JASPAR yes 31848005
chr1 117421511 117421522 DUX4 JASPAR yes 31848006
chr1 117421517 117421897 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21334048
chr1 117421517 117421897 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107825112
Genes associated with rs546280258[chr1:117421517], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More