EnhancerDB
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  3. rs546420394[chr1:235120644]
Enhancers that have rs546420394[chr1:235120644]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 235087405 235127975 enh996
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs546420394[chr1:235120644]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 235119925 235121066 TEF1 GTRD no Bone (Osteoblast) 21402606
chr1 235119925 235121066 TEF1 GTRD no Bone (Osteoblast) 107885394
chr1 235120174 235120764 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21402614
chr1 235120174 235120764 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107885403
chr1 235120194 235120660 ZNF274 GTRD no Bone Marrow (K562) 21402617
chr1 235120194 235120660 ZNF274 GTRD no Bone Marrow (K562) 107885408
chr1 235120231 235120683 ZBTB33 GTRD no Lung (A549) 107885411
chr1 235120255 235120698 TCF7L2 GTRD no Colon (HCT116) 21402623
chr1 235120255 235120698 TCF7L2 GTRD no Colon (HCT116) 107885416
chr1 235120326 235120645 ZNF274 GTRD no Liver (HepG2) 21402625
chr1 235120326 235120645 ZNF274 GTRD no Liver (HepG2) 107885418
chr1 235120643 235120648 TFAP2A TRANSFAC yes 36338403
chr1 235120643 235120649 MZF1 JASPAR yes 36338404
Genes associated with rs546420394[chr1:235120644], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More