EnhancerDB
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  3. rs546516057[chr2:232527746]
Enhancers that have rs546516057[chr2:232527746]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 232518645 232563095 enh6202
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
chr2 232527256 232532109 vista1014
VISTA
Transcript factors that have rs546516057[chr2:232527746]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 232526546 232528057 POLR2A UCSC Txn Factor no Conserved 107690830
chr2 232526546 232528057 POLR2A UCSC Txn Factor no Conserved 108435711
chr2 232526838 232527764 GABPA UCSC Txn Factor no Conserved 107690835
chr2 232526838 232527764 GABPA UCSC Txn Factor no Conserved 108435717
chr2 232527734 232527746 HINFP JASPAR yes 68301018
chr2 232527734 232527746 HINFP JASPAR yes 81733289
chr2 232527743 232527747 NFE TRANSFAC yes 68301019
chr2 232527743 232527747 NFE TRANSFAC yes 81733290
Genes associated with rs546516057[chr2:232527746], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More