EnhancerDB
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  3. rs546534979[chr19:4379006]
Enhancers that have rs546534979[chr19:4379006]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 4365204 4379535 enh4970
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs546534979[chr19:4379006]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 4378597 4381714 ZNF274 GTRD no Blood (GM12878) 21841367
chr19 4378597 4381714 ZNF274 GTRD no Blood (GM12878) 108371857
chr19 4378597 4381714 ZNF274 GTRD no Blood (GM12878) 108371858
chr19 4378598 4381618 ZNF274 GTRD no Blood (GM12878) 21841368
chr19 4378598 4381618 ZNF274 GTRD no Blood (GM12878) 108371859
chr19 4378598 4381618 ZNF274 GTRD no Blood (GM12878) 108371860
chr19 4378602 4381154 ZNF274 GTRD no Blood (GM12878) 21841369
chr19 4378602 4381154 ZNF274 GTRD no Blood (GM12878) 108371861
chr19 4378669 4381085 ZNF274 GTRD no Blood (GM12878) 21841370
chr19 4378669 4381085 ZNF274 GTRD no Blood (GM12878) 108371862
chr19 4378684 4380880 ZNF274 GTRD no Blood (GM12878) 21841371
chr19 4378684 4380880 ZNF274 GTRD no Blood (GM12878) 108371863
chr19 4378737 4381019 ZNF274 GTRD no Blood (GM12878) 21841372
chr19 4378737 4381019 ZNF274 GTRD no Blood (GM12878) 108371864
chr19 4378782 4380767 ZNF143 GTRD no Epithelial (MCF-7) 21841373
chr19 4378782 4380767 ZNF143 GTRD no Epithelial (MCF-7) 108371865
chr19 4378797 4380481 ZNF143 GTRD no Epithelial (MCF-7) 21841374
chr19 4378797 4380481 ZNF143 GTRD no Epithelial (MCF-7) 108371866
chr19 4378823 4380538 ZNF274 GTRD no Blood (GM12878) 21841375
chr19 4378823 4380538 ZNF274 GTRD no Blood (GM12878) 108371867
chr19 4378855 4381020 ZNF274 GTRD no Blood (GM12878) 21841376
chr19 4378855 4381020 ZNF274 GTRD no Blood (GM12878) 108371868
chr19 4378859 4380235 ZNF274 GTRD no Cervix (HeLa-S3) 21841377
chr19 4378859 4380235 ZNF274 GTRD no Cervix (HeLa-S3) 108371869
chr19 4378863 4380182 ZNF274 GTRD no Cervix (HeLa-S3) 21841378
chr19 4378863 4380182 ZNF274 GTRD no Cervix (HeLa-S3) 108371870
chr19 4378878 4380772 ZNF143 GTRD no Epithelial (MCF-7) 21841379
chr19 4378878 4380772 ZNF143 GTRD no Epithelial (MCF-7) 108371871
chr19 4378920 4380843 ZNF274 GTRD no Blood (GM12878) 21841380
chr19 4378920 4380843 ZNF274 GTRD no Blood (GM12878) 108371872
chr19 4378941 4381117 ZNF274 GTRD no Blood (GM12878) 21841381
chr19 4378941 4381117 ZNF274 GTRD no Blood (GM12878) 108371873
chr19 4378990 4379009 PAX5 JASPAR yes 112170334
Genes associated with rs546534979[chr19:4379006], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More