EnhancerDB
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  3. rs546625940[chr5:173205849]
Enhancers that have rs546625940[chr5:173205849]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 173178093 173268555 enh8886
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr5 173205731 173206004 vista50234
VISTA
Transcript factors that have rs546625940[chr5:173205849]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 173205744 173206024 MAFK UCSC Txn Factor no Conserved 108537606
chr5 173205745 173206025 MAFF UCSC Txn Factor no Conserved 108537607
chr5 173205828 173205849 IRF1 JASPAR yes 67903970
chr5 173205828 173205849 IRF1 JASPAR yes 70766846
chr5 173205844 173205856 FOXC2 JASPAR yes 67903976
chr5 173205844 173205856 FOXC2 JASPAR yes 70766852
chr5 173205844 173205858 FOXF2 JASPAR yes 67903977
chr5 173205844 173205858 FOXF2 JASPAR yes 70766853
chr5 173205845 173205856 FOXB1 JASPAR yes 67903978
chr5 173205845 173205856 FOXC1 JASPAR yes 67903979
chr5 173205845 173205856 FOXB1 JASPAR yes 70766854
chr5 173205845 173205856 FOXC1 JASPAR yes 70766855
chr5 173205846 173205850 YY1 TRANSFAC yes 67903980
chr5 173205846 173205850 YY1 TRANSFAC yes 70766856
Genes associated with rs546625940[chr5:173205849], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More