EnhancerDB
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  3. rs546702629[chr1:171400829]
Enhancers that have rs546702629[chr1:171400829]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 171385965 171412775 enh12367
Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Prostate (RWPE1)
Transcript factors that have rs546702629[chr1:171400829]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 171400350 171400966 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21349647
chr1 171400823 171400840 RXRA JASPAR yes 33080000
chr1 171400828 171400838 SP1 JASPAR yes 33080001
chr1 171400829 171400837 SP1 TRANSFAC yes 33080002
chr1 171400829 171400838 SP1 TRANSFAC yes 33080003
Genes associated with rs546702629[chr1:171400829], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More