EnhancerDB
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  3. rs547041961[chr17:65470934]
Enhancers that have rs547041961[chr17:65470934]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 65460484 65480775 enh32309
Astrocyte Colon (HCT116) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Kidney Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Spleen Muscle (Myotube) Lung Muscle (A673) Heart
Transcript factors that have rs547041961[chr17:65470934]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 65470414 65470935 CTCF UCSC Txn Factor no Conserved 108285873
chr17 65470487 65471104 TCF7L2 GTRD no Colon (HCT116) 21782239
chr17 65470487 65471104 TCF7L2 GTRD no Colon (HCT116) 108285876
chr17 65470530 65471330 ZNF143 GTRD no Epithelial (MCF-7) 21782241
chr17 65470530 65471330 ZNF143 GTRD no Epithelial (MCF-7) 108285878
chr17 65470552 65471283 ZNF143 GTRD no Epithelial (MCF-7) 21782243
chr17 65470552 65471283 ZNF143 GTRD no Epithelial (MCF-7) 108285880
chr17 65470925 65470934 HIC2 JASPAR yes 55508869
chr17 65470926 65470938 TFAP2A JASPAR yes 55508870
chr17 65470926 65470938 TFAP2B JASPAR yes 55508871
chr17 65470926 65470938 TFAP2C JASPAR yes 55508872
chr17 65470931 65470952 IRF1 JASPAR yes 55508873
Genes associated with rs547041961[chr17:65470934], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More