EnhancerDB
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  3. rs548096466[chr1:171396752]
Enhancers that have rs548096466[chr1:171396752]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 171385965 171412775 enh12367
Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Prostate (RWPE1)
Transcript factors that have rs548096466[chr1:171396752]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 171396736 171396757 IRF1 JASPAR yes 33079423
chr1 171396741 171396756 MEF2A JASPAR yes 33079424
chr1 171396742 171396757 MEF2C JASPAR yes 33079425
chr1 171396742 171396763 IRF1 JASPAR yes 33079426
chr1 171396743 171396755 MEF2A JASPAR yes 33079427
chr1 171396744 171396754 MEF2A JASPAR yes 33079428
chr1 171396746 171396758 IRF1 JASPAR yes 33079430
chr1 171396746 171396760 IRF7 JASPAR yes 33079431
chr1 171396749 171396761 FOXC2 JASPAR yes 33079432
chr1 171396750 171396761 FOXC1 JASPAR yes 33079433
chr1 171396751 171396755 YY1 TRANSFAC yes 33079434
Genes associated with rs548096466[chr1:171396752], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More