EnhancerDB
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  3. rs548499453[chr15:42229160]
Enhancers that have rs548499453[chr15:42229160]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr15 42202285 42235244 enh3549
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
chr15 42228791 42229215 vista19769
VISTA
Transcript factors that have rs548499453[chr15:42229160]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr15 42228828 42230099 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21651351
chr15 42228828 42230099 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108135311
chr15 42228991 42229231 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21651353
chr15 42228991 42229231 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108135314
chr15 42229155 42229162 NFATC2 JASPAR yes 23007488
chr15 42229155 42229162 NFATC2 JASPAR yes 70514231
chr15 42229156 42229164 FOXO3 JASPAR yes 23007489
chr15 42229156 42229164 FOXO3 JASPAR yes 70514232
chr15 42229157 42229171 SPI1 JASPAR yes 23007490
chr15 42229157 42229171 SPI1 JASPAR yes 70514233
chr15 42229160 42229171 SPDEF JASPAR yes 23007491
chr15 42229160 42229171 SPDEF JASPAR yes 70514234
Genes associated with rs548499453[chr15:42229160], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More