EnhancerDB
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  3. rs548499816[chr6:30770298]
Enhancers that have rs548499816[chr6:30770298]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 30740965 30818275 enh23149
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs548499816[chr6:30770298]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 30770294 30770303 SNAI2 JASPAR yes 101052164
chr6 30770294 30770304 ID4 JASPAR yes 101052165
chr6 30770294 30770304 NHLH1 JASPAR yes 101052166
chr6 30770294 30770304 TCF3 JASPAR yes 101052167
chr6 30770294 30770304 TCF4 JASPAR yes 101052168
chr6 30770296 30770305 ZEB1 JASPAR yes 101052169
chr6 30770297 30770305 TBX5 JASPAR yes 101052170
Genes associated with rs548499816[chr6:30770298], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More