EnhancerDB
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  3. rs548712854[chr1:39597015]
Enhancers that have rs548712854[chr1:39597015]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39588469 39628695 enh11759
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs548712854[chr1:39597015]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39596998 39597019 IRF1 JASPAR yes 28255517
chr1 39597000 39597015 STAT2 JASPAR yes 28255518
chr1 39597004 39597015 CDX2 JASPAR yes 28255524
chr1 39597007 39597028 IRF1 JASPAR yes 28255525
chr1 39597008 39597020 FOXC2 JASPAR yes 28255526
chr1 39597011 39597026 FOXP1 JASPAR yes 28255528
chr1 39597012 39597027 FOXP1 JASPAR yes 28255529
chr1 39597013 39597028 FOXP1 JASPAR yes 28255530
chr1 39597014 39597029 FOXP1 JASPAR yes 28255531
chr1 39597015 39597030 FOXP1 JASPAR yes 28255532
Genes associated with rs548712854[chr1:39597015], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More