EnhancerDB
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  3. rs548828707[chr1:19719022]
Enhancers that have rs548828707[chr1:19719022]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19711685 19745775 enh98
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Neural Stem Cells (H9) Thymus Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs548828707[chr1:19719022]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19719017 19719038 IRF1 JASPAR yes 27184519
chr1 19719018 19719039 IRF1 JASPAR yes 27184520
chr1 19719019 19719034 FOXP1 JASPAR yes 27184521
chr1 19719020 19719035 FOXP1 JASPAR yes 27184522
chr1 19719021 19719027 TBP TRANSFAC yes 27184523
chr1 19719021 19719036 FOXP1 JASPAR yes 27184524
chr1 19719021 19719042 IRF1 JASPAR yes 27184525
chr1 19719022 19719037 FOXP1 JASPAR yes 27184526
chr1 19719022 19719043 IRF1 JASPAR yes 27184527
Genes associated with rs548828707[chr1:19719022], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More