EnhancerDB
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  3. rs548879436[chr16:88831668]
Enhancers that have rs548879436[chr16:88831668]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 88819352 88850435 enh16903
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs548879436[chr16:88831668]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 88831282 88831812 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21736931
chr16 88831282 88831812 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108223383
chr16 88831289 88831859 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21736932
chr16 88831289 88831859 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108223384
chr16 88831387 88831717 EP300 UCSC Txn Factor no Conserved 108223385
chr16 88831404 88831874 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21736933
chr16 88831404 88831874 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108223386
chr16 88831406 88831716 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21736934
chr16 88831406 88831716 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108223387
chr16 88831406 88831729 MYC UCSC Txn Factor no Conserved 108223388
chr16 88831465 88831669 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21736935
chr16 88831465 88831669 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108223389
chr16 88831489 88832059 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21736936
chr16 88831489 88832059 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108223390
chr16 88831649 88832296 TCF7L2 GTRD no Colon (HCT116) 21736937
chr16 88831649 88832296 TCF7L2 GTRD no Colon (HCT116) 108223391
chr16 88831653 88832606 ZNF143 GTRD no Epithelial (MCF-7) 21736938
chr16 88831653 88832606 ZNF143 GTRD no Epithelial (MCF-7) 108223392
chr16 88831659 88831678 CTCF JASPAR yes 12301637
chr16 88831659 88831678 CTCF JASPAR yes 49418609
Genes associated with rs548879436[chr16:88831668], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More