EnhancerDB
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  3. rs549140378[chr12:65076363]
Enhancers that have rs549140378[chr12:65076363]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 65039765 65087550 enh2405
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs549140378[chr12:65076363]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 65076096 65076577 ZNF274 GTRD no Liver (HepG2) 21552917
chr12 65076096 65076577 ZNF274 GTRD no Liver (HepG2) 108041936
chr12 65076321 65076765 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21552918
chr12 65076321 65076765 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108041937
chr12 65076345 65076366 IRF1 JASPAR yes 121425963
chr12 65076346 65076367 IRF1 JASPAR yes 121425965
chr12 65076347 65076368 IRF1 JASPAR yes 121425967
chr12 65076348 65076363 FOXP1 JASPAR yes 121425968
chr12 65076350 65076365 FOXP1 JASPAR yes 121425969
chr12 65076351 65076372 IRF1 JASPAR yes 121425970
chr12 65076352 65076367 FOXP1 JASPAR yes 121425971
chr12 65076352 65076373 IRF1 JASPAR yes 121425972
chr12 65076356 65076371 PRDM1 JASPAR yes 121425973
chr12 65076356 65076371 STAT2 JASPAR yes 121425974
Genes associated with rs549140378[chr12:65076363], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More