EnhancerDB
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  3. rs549185642[chr2:240196385]
Enhancers that have rs549185642[chr2:240196385]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 240159334 240219661 enh6224
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr2 240196255 240196671 vista35498
VISTA
Transcript factors that have rs549185642[chr2:240196385]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 240196081 240196706 POLR2A UCSC Txn Factor no Conserved 108436011
chr2 240196081 240196706 POLR2A UCSC Txn Factor no Conserved 108436012
chr2 240196370 240196386 GLIS1 JASPAR yes 22245652
chr2 240196370 240196386 GLIS1 JASPAR yes 82224594
chr2 240196371 240196385 GLIS3 JASPAR yes 22245653
chr2 240196371 240196385 GLIS3 JASPAR yes 82224595
chr2 240196381 240196386 SP1 TRANSFAC yes 22245654
chr2 240196381 240196386 SP1 TRANSFAC yes 82224596
chr2 240196381 240196387 SP1 TRANSFAC yes 22245655
chr2 240196381 240196387 SP1 TRANSFAC yes 82224597
Genes associated with rs549185642[chr2:240196385], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More