EnhancerDB
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  3. rs549228541[chr14:55116270]
Enhancers that have rs549228541[chr14:55116270]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr14 55101597 55134083 enh3199
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Stomach Muscle (A673) Placenta Uterus Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Heart
Transcript factors that have rs549228541[chr14:55116270]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr14 55116052 55116817 SOX2 GTRD no Neural Stem Cells (H9) 21619439
chr14 55116052 55116817 SOX2 GTRD no Neural Stem Cells (H9) 108103144
chr14 55116052 55116817 SOX2 GTRD no Neural Stem Cells (H9) 108103145
chr14 55116054 55117203 ZNF274 GTRD no Liver (HepG2) 21619440
chr14 55116054 55117203 ZNF274 GTRD no Liver (HepG2) 108103146
chr14 55116054 55117203 ZNF274 GTRD no Liver (HepG2) 108103147
chr14 55116134 55117199 ZNF274 GTRD no Bone Marrow (K562) 108103148
chr14 55116189 55117372 ZNF274 GTRD no Liver (HepG2) 21619441
chr14 55116189 55117372 ZNF274 GTRD no Liver (HepG2) 108103149
chr14 55116239 55116866 ZNF274 GTRD no Bone Marrow (K562) 108103150
chr14 55116267 55116286 RFX2 JASPAR yes 115496866
Genes associated with rs549228541[chr14:55116270], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More