EnhancerDB
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  3. rs549271025[chr1:235134613]
Enhancers that have rs549271025[chr1:235134613]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 235130325 235168235 enh997
Bone Marrow (K562) Liver Astrocyte Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Lung Heart
Transcript factors that have rs549271025[chr1:235134613]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 235132889 235134652 POLR2A UCSC Txn Factor no Conserved 107885447
chr1 235132889 235134652 POLR2A UCSC Txn Factor no Conserved 107885448
chr1 235134030 235134690 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21402876
chr1 235134030 235134690 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107885536
chr1 235134078 235134674 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21402880
chr1 235134078 235134674 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 107885541
chr1 235134078 235134674 TCF7L2 UCSC Txn Factor no Conserved 107885542
chr1 235134139 235134635 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21402881
chr1 235134139 235134635 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107885543
chr1 235134149 235134613 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21402883
chr1 235134149 235134613 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107885545
chr1 235134596 235134617 IRF1 JASPAR yes 36340192
chr1 235134601 235134616 MEF2A JASPAR yes 36340193
chr1 235134601 235134621 RREB1 JASPAR yes 36340194
chr1 235134601 235134622 IRF1 JASPAR yes 36340195
chr1 235134602 235134617 MEF2C JASPAR yes 36340196
chr1 235134602 235134623 IRF1 JASPAR yes 36340197
chr1 235134603 235134615 MEF2A JASPAR yes 36340198
chr1 235134603 235134615 MEF2B JASPAR yes 36340199
chr1 235134603 235134615 MEF2D JASPAR yes 36340200
chr1 235134606 235134620 IRF7 JASPAR yes 36340202
chr1 235134606 235134626 RREB1 JASPAR yes 36340203
chr1 235134607 235134628 IRF1 JASPAR yes 36340204
chr1 235134608 235134614 TCF4 TRANSFAC yes 36340205
chr1 235134608 235134623 FOXP1 JASPAR yes 36340206
chr1 235134609 235134624 STAT2 JASPAR yes 36340207
chr1 235134611 235134623 IRF1 JASPAR yes 36340208
chr1 235134611 235134625 IRF7 JASPAR yes 36340209
chr1 235134611 235134626 IRF9 JASPAR yes 36340210
chr1 235134612 235134630 IRF2 JASPAR yes 36340211
chr1 235134612 235134632 RREB1 JASPAR yes 36340212
chr1 235134612 235134633 IRF1 JASPAR yes 36340213
chr1 235134613 235134619 TCF4 TRANSFAC yes 36340214
chr1 235134613 235134628 FOXP1 JASPAR yes 36340215
chr1 235134613 235134634 IRF1 JASPAR yes 36340216
Genes associated with rs549271025[chr1:235134613], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More