EnhancerDB
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Enhancers that have rs549301668[chr17:29821539]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 29816091 29829595 enh4360
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Esophagus Blood (T-cell) Lung (PC-9) Blood (OCI-LY7) Blood (GM12878) Placenta Thyroid Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Neural Stem Cells (H9) Thymus Stomach
chr17 29821482 29821571 vista24402
VISTA
Transcript factors that have rs549301668[chr17:29821539]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 29821064 29821660 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21750098
chr17 29821064 29821660 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108249433
chr17 29821218 29821738 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21750099
chr17 29821218 29821738 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108249435
chr17 29821261 29821641 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21750100
chr17 29821261 29821641 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108249437
chr17 29821267 29821651 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21750101
chr17 29821267 29821651 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108249438
chr17 29821290 29821586 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21750103
chr17 29821290 29821586 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108249441
chr17 29821314 29821750 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21750105
chr17 29821314 29821750 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108249443
chr17 29821318 29821754 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21750106
chr17 29821318 29821754 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108249444
chr17 29821332 29821688 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21750107
chr17 29821332 29821688 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108249445
chr17 29821337 29821627 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21750108
chr17 29821337 29821627 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108249446
chr17 29821342 29821682 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21750109
chr17 29821342 29821682 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108249447
chr17 29821381 29821617 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21750110
chr17 29821381 29821617 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108249448
chr17 29821381 29821645 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21750111
chr17 29821381 29821645 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108249449
chr17 29821416 29821636 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21750112
chr17 29821416 29821636 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108249450
chr17 29821417 29821693 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21750113
chr17 29821417 29821693 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108249451
chr17 29821539 29821553 SPIC JASPAR yes 21218613
chr17 29821539 29821553 SPIC JASPAR yes 53842413
Genes associated with rs549301668[chr17:29821539], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More