EnhancerDB
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  3. rs549385193[chr17:56019987]
Enhancers that have rs549385193[chr17:56019987]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 55982093 56031480 enh4496
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs549385193[chr17:56019987]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 56019980 56019990 SREBF2 JASPAR yes 55002677
chr17 56019980 56019991 USF1 JASPAR yes 55002678
chr17 56019980 56019991 USF2 JASPAR yes 55002679
chr17 56019983 56019996 NFKB1 JASPAR yes 55002680
Genes associated with rs549385193[chr17:56019987], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More