EnhancerDB
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  3. rs549465108[chr6:106253466]
Enhancers that have rs549465108[chr6:106253466]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 106226176 106267255 enh23455
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Ovary Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen
chr6 106253342 106253636 vista52947
VISTA
Transcript factors that have rs549465108[chr6:106253466]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 106253393 106253713 JUND UCSC Txn Factor no Conserved 108541134
chr6 106253450 106253468 RARA JASPAR yes 70409047
chr6 106253450 106253468 RARA JASPAR yes 103983073
chr6 106253461 106253471 ALX3 JASPAR yes 70409049
chr6 106253461 106253471 LBX2 JASPAR yes 70409050
chr6 106253461 106253471 MIXL1 JASPAR yes 70409051
chr6 106253461 106253471 ALX3 JASPAR yes 103983075
chr6 106253461 106253471 LBX2 JASPAR yes 103983076
chr6 106253461 106253471 MIXL1 JASPAR yes 103983077
chr6 106253462 106253470 LHX9 JASPAR yes 70409052
chr6 106253462 106253470 SHOX JASPAR yes 70409053
chr6 106253462 106253470 LHX9 JASPAR yes 103983078
chr6 106253462 106253470 SHOX JASPAR yes 103983079
Genes associated with rs549465108[chr6:106253466], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More